Phylogenetic Cladograms: Tools for Analyzing Biomedical Data.
Abu-Asab MS, and Jim DeLeo.
In Springer Handbook of Bio-/Neuroinformatics
Editors: Nikola Kasabov
ISBN: 978-3-642-30573-3 (Print) 978-3-642-30574-0 (Online) Manuscript: | Abstract

Systems Biology Profiling of AMD on the Basis of Gene Expression.
Abu-Asab MS, Salazar J, Tuo J, Chan CC.
PMID: 24349763 Published in final edited form as: J Ophthalmol. 2013;2013:453934. doi: 10.1155/2013/453934. Epub 2013 Nov 14.Manuscript: | Abstract | Full Text | PDF

Identifying Early Events of Gene Expression in Breast Cancer with Systems Biology Phylogenetics
Abu-Asab MS, Abu-Asab N, Loffredo CA, Clarke R, Amri H.
PMID: 23548567 Published in final edited form as: Cytogenet Genome Res. 2013 Apr 2:206-214.Manuscript: | Abstract | Full Text | PDF

Analyzing heterogeneous complexity in complementary and alternative medicine research: a systems biology solution via parsimony phylogenetics
Abu-Asab M, Koithan M, Shaver J, Amri H.
PMID: 22327551 Published in final edited form as: Forsch Komplementmed. 2012;19 Suppl 1:42-8. Epub 2012 Jan 20.Manuscript: | Abstract | Full Text | PDF

Endometriosis gene expression heterogeneity and biosignature: a phylogenetic analysis
Abu-Asab M, Zhang M, Amini D, Abu-Asab N, Amri H.
PMID: 22203846 Published in final edited form as: Obstet Gynecol Int. 2011;2011:719059. Epub 2011 Dec 13.Manuscript: | Abstract | Full Text | PDF

Biomarkers in the Age of Omics: Time for a Systems Biology Approach
Abu-Asab MS, Chaouchi M, Alesci S, Galli S, Laassri M, Cheema AK, Atouf F, Vanmeter J, Amri H.
PMID: 21319991 Published in final edited form as: OMICS. 2011 Feb 14.Manuscript: | Abstract | Full Text | PDF

Algorithmic assessment of vaccine-induced selective pressure and its implications on future vaccine candidates
Abu-Asab MS, Laassri M, Amri H.
PMID: 20150957 Published in final edited form as: Adv Bioinformatics. 2010;2010:178069. Epub 2010 Feb 1.Manuscript: | Abstract | FullText | PDF

Microarrays Need Phylogenetics
Mones Abu-Asab
Science Signaling Published in final edited form as: Sci. STKE (E-Letter, 30 January 2009) http://stke.sciencemag.org/cgi/eletters/sigtrans;1/51/eg11.Manuscript: | Letter

Phylogenetic Modeling of Heterogeneous Gene-Expression Microarray Data from Cancerous Specimens
Mones Abu-Asab, Mohamed Chaouchi, and Hakima Amri
OMICS: A Journal of Integrative Biology. Author manuscript available in PMC 2008 November 17.
PMCID: PMC2583934 Published in final edited form as: Omics 2008 Sept; 12(3): 183-199.
doi: 10.1089/omi.2008.0010.Manuscript: | Abstract | Full Text | PDF

Evolutionary medicine: A meaningful connection between omics, disease, and treatment
Mones Abu-Asab, Mohamed Chaouchi, and Hakima Amri
Proteomics Clin Appl. Author manuscript; available in PMC 2008 May 5.
PMCID: PMC2367146 Published in final edited form as: Proteomics Clin Appl. 2008 February; 2(2): 122–134.
doi: 10.1002/prca.200780047.Manuscript: | Abstract | Full Text | PDF 

Phyloproteomics: What Phylogenetic Analysis Reveals about Serum Proteomics
Mones Abu-Asab, Mohamed Chaouchi, and Hakima Amri
J Proteome Res. Author manuscript available in PMC 2008 March 20.
PMCID: PMC2270414 Published in final edited form as: J Proteome Res. 2006 September; 5(9): 2236–2240.
doi: 10.1021/pr0504485.Manuscript: | Abstract | Full Text | PDF